TraP: Percentile value of TraP score for each synonymous mutation
The URL of TraP is http://trap-score.org/about.jsp
SilVA: Percentile value of SilVA score for each synonymous mutation
The URL of SilVA is http://compbio.cs.toronto.edu/silva/
FATHMM-MKL: Percentile value of FATHMM-MKL score for each synonymous mutation
The URL of FATHMM-MKL is http://fathmm.biocompute.org.uk/fathmmMKL.htm#format
PrDSM (v1.0): Predictive score of PrDSM for each synonymous mutation. The predictive score between 0 and 1, with the highest score indicating the most deleterious synonymous variant and the lowest score the synonymous more benign variant. If a PrDSM score is >0.308 the corresponding synonymous mutation is considered as deleterious. If the score <=0.308 the variant is considered as benign.
GeneID: ENSEMBL GeneID
TranscriptID: ENSEMBL TranscriptID
GeneName: GeneName provided in ENSEMBL annotation
Note: Ensembl database build version is v92; https://www.ensembl.org/info/docs/tools/vep/index.html