bgzip -c PrDSM_Grch37_20190304.vcf > PrDSM_Grch37_20190304.vcf.gz
tabix -p vcf PrDSM_Grch37_20190304.vcf.gz
PrDSM predictions used the GRCh37/hg19 genome build.
Minimum requirements of usage:
Tabix-0.2.6
Add tabix to your PATH:
export PATH=./tabix-0.2.6/:$PATH
Download our pre-computed data:
PrDSM_Grch37_20190304.vcf.gz
PrDSM_Grch37_20190304.vcf.gz.tbi
MD5Sums
Benign mutations of the full independent dataset
Usage:
A synonymous variant, like this:
tabix PrDSM_Grch37_20190304.vcf.gz chrom:start-end
eg.
tabix PrDSM_Grch37_20190304.vcf.gz 1:69096-69096 (tab-separated )
Large batches of synonymous variants, like this:
bash file_in.sh > file_out.vcf
eg.
#! /bin/sh
tabix PrDSM_Grch37_20190304.vcf.gz 1:69096-69096
tabix PrDSM_Grch37_20190304.vcf.gz 1:69099-69099
tabix PrDSM_Grch37_20190304.vcf.gz 1:69102-69102